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Adams, J. D., B. Rogers, L. Manning, Z. Hu, T. Thundat, H. Cavazos, and S. C. Minne,
“Piezoelectric self-sensing of adsorption-induced microcantilever bending,” Sensors and Actuators A-Physical
121(2): 457-461 (June 2005).
Barnes, M. D., A. Mehta, P. Kumar, B.
G. Sumpter, and D. W. Noid, “Confinement effects on the structure and dynamics
of polymer systems from the mesoscale to the nanoscale,” Journal of Polymer Science Part B – Polymer Physics
43(13): 1571-1590 (July 2005).
Barnes, M. D., P. S. Krstic, P. Kumar,
A. Mehta, and J. Wells, “Far-field modulation of fluorescence decay rates in
pairs of oriented semiconducting polymer nanostructures,” Physical Review B 71(24):
Art. No. 241303 (June 2005).
Blishchenko, E. Y., O. V. Sazonovz, O. A.
Kalinina, E. V. Moiseeva, A. A. Vass, A. A. Kerelin, and V. T. Ivanova,
“Anti-tumor effect of valorphin in vitro and in vivo – Combined action with
cytostatic drugs,” Cancer Biology &
Therapy 4(1): 118-124 (January
2005).
Boiadjiev, V.I., G. M. Brown, L. A. Pinnaduwage, G. Goretzki, P. V. Bonnesen, T. Thundat,
“Photochemcial hydrosilylation of 11-undecenyltriethylammonium bromide with
hydrogen-terminated Si surfaces for the development of robust microcantilever
sensors for Cr (VI),” Langmuir 21(4): 1139-1142 (February 2005).
Chick, W. S. H., S.
E. Mentzer, D. A. Carpenter, E. M Rinchik, D. Johnson, and Y. You,
“X-ray-induced deletion complexes in embryonic stem cells on mouse chromosome
15,” Mammalian Genome 16(9): 661-671 (September 2005).
Cho, H. P., Y. Liu, M. Gomez, J.
Dunlap, M. Tyers, and Y. S. Wang, “The dual-specificity phosphatase CDC14B
bundles and stabilizes microtubles,” Molecular
and Cellular Biology 25(11):
4541-4551 (June 2005).
Culiat, C. T., M. L. Klebig, Z. W. Liu,
H. Monroe, B. Stanford, J. Desai, S. Tandan, L. Hughes, M. K. Kerley, D. A.
Carpenter, D. K. Johnson, E. M. Rinchik, and Q. B. Li, “Identification of
mutations from phenotype-driven ENU mutagenesis in mouse Chromosome 7,” Mammalian Genome
16(8): 555-566 (August 2005).
Dareing, D. W. and T. Thundat,
“Simulation of adsorption-induced stress of a microcantilever sensor,” Journal of Applied Physics
97 (4): Art. No. 043526 (February
2005).
Dareing, D. W. and T. Thundat, “Mighty
mites,” Mechanical Engineering 127(9): 34-37 (September 2005).
Dareing, D. W., T. Thundat, S. M. Jeon,
and M. Nicholson, “Modal analysis of microcantilever sensors with environmental
damping,” Journal of Applied Physics 97(8): Art. No. 084902 (April 2005).
Ding, F., Y. Prints, M. S. Dhar, D. K.
Johnson, C. Garnacho-Montero, R. D. Nicholls, and U. Francke, “Lack of
Pwcr1/MBII-85 snoRNA is critical for neonatal lethality in Prader-Willi
syndrome mouse models,” Mammalian Genome
16(6): 424-431 (June 2005).
Feil, J., W. S. Feil, P. Chain, F.
Larimer, G. DiBartolo, A. Copeland, A. Lykidis, S. Trong, M. Nolan, E. Goltsman,
J. Thiel, S. Malfatti, J. E. Loper, A. Lapidus, J. C. Detter, M. Land, P. M.
Richardson, N. C. Kyrpides, N. Ivanova, and S. E. Lindow, “Comparison of the
complete genome sequences of Pseudomonas syringae pv. Syringae B728a and pv. tomato DC3000,”
Proceedings of the National Academy of
Sciences of the United States of America 102(31): 11064-11069 (August 2005).
Goldowitz, D., W. N. Frankel, J. S. Takahasi, M. Holtz-Vitaterna, C. Bult, W. A. Kibbe,
J. Snoddy, Y. X. Li, S. Pretel, J. Yates, and D. J. Swanson, “Large-scale
mutagenesis of the mouse to understand the genetic bases of nervous system
structure and function,” Molecular Brain
Research 132(2): 105-115
(December 2004).
Hu, Z. Y., V. Boiadjiev, and T.
Thundat, “Nanocatalytic spontaneous ignition and self-supporting
room-temperature combustion,” Energy
& Fuels 19(3): 855-858 (May
– June, 2005).
Huang, B., L. J. Foote, T. K. Langford,
S. M. Davern, C. K. McKeown, and S. J. Kennel, “A diabody that dissociates to
monomer forms at low concentration: effects on binding activity and tumor
targeting,” Biochem. and Biophys. Res. Comm., 327(4): 999-1005
(February 2005).
Ji, H. F., X. D. Yan, J. Zhang, and T. Thundat,
“Molecular recognition of biowarfare agents using micromechanical sensors,” Expert Review of Molecular
Diagnostics 4(6): 859-866 (November 2004).
Kalinin, S. V., B. J. Rodriguez, S.
Jesse, T. Thundat, and A. Gruverman, “Electromechanical imaging of biological
systems with sub-10 nm resolution,” Applied
Physics Letters 87(5): Art. No.
053901 (August 2005).
Karim, K., K. T. Klasson, R. Hoffmann,
S. R. Drescher, D. W. DePaoli, and M. H> Al-Dahhan, “Anaerobic digestion of
animal waste: Effect of mixing", Bioresource Technology 96(14):
1607-1612 (September 2005).
Karim, K., R. Hoffman, T. Klasson, and
M. H. Al-Dahhan, “Anaerobic digestion of animal waste: Waste strength versus
impact of mixing," Bioresource
Technology 96(16): 1771-1781
(November 2005).
Khokhryakov, V. F., K. G. Suslova, V.
V. Vostrotin, S. A. Romanov, K. F. Eckerman, M. P. Krahenbuhl, and S. C.
Miller, “Adaptation of the ICRP Publication 66 Respiratory Tract Model to data
on plutonium biokenetics for Mayak workers,” Health Physics 88(2):
125-132 (February 2005).
Kirov, S. A., X. Peng, E. Baker, D. Schmoyer, B. Zhang, and J. Snoddy, “GeneKeyDB: A
lightweight, gene-centric, relational database to support data mining
environments,” BMC Bioinformatics 6: Art. No. 72 (March 2005).
Kohen, R., S. Kirov, G. P. Navaja, H. K. Happe, M. W. Hamblin, J. R. Snoddy, J.
F. Neumaier, and F. Petty, “Gene expression profiling in the hippocampus of
learned helpless and nonhelpless rats,” Phamacogenomics
Journal 5(5): 278-291(October 2005).
Kolker, E., A. F. Picone, M. Y. Galperin,
M. F. Romine, R. Higdon, K. S. Makarova, N. Kolker, G. A. Anderson, X. Y. Qiu,
K. J. Auberry, G. Babnigg, A. S. Beliaev, P. Edlefsen, D. A. Elias, Y. A.
Gorby, T. Holzman, J. A. Klappenbach, K. T. Konstantinidis, M. L. Land, M. S.
Lipton, L. A. McCue, M. Monroe, L. Pasa-Tolic, G. Pinchuk, S;. Purvine, M. H.
Serres, S. Tsapin, B. A. Zakrajsek, J. H.
Zhou, F. W. Larimer, C. E. Lawrence, M. Riley, F. R. Collart, J. R. Yates, R.
D. Smith, C. S. Giometti, K. H. Nealson, J. K. Fredrickson, J. M. Tiedje, “Global
profiling of Shewanella oneidensis MR-1: Expression of hypothetical genes and
improved functional annotations,” Proceedings
of the National Academy of Sciences of the United States of America 102(6): 2099-2104 (February 2005).
Kuritz, T., I. Lee, E. T. Owens, M.
Humayun, and E. Greenbaum, “Molecular
photovoltaics and the photoactivation of mammalian cells,” IEEE Transactions on NanoBioscience
4(2): 196-200 (June 2005).
Leggett, R. W., K. E. Eckerman, V. E.
Khokhryakov, K. G. Suslova, M. P. Krahenbuhl, and S. C. Miller, “Mayak worker
study: An improved doses from internally biokenetic model for reconstructing
deposited plutonium,” Radiation Research 164(2): 111-122 (August 2005).
Lereu, A. L., A. Passian, J. P.
Goudonnet, T. Thundat, and T. L. Ferrell, “Optical modulation processes in thin
films based on thermal effects of surface plasmons,” Applied Physics Letter 86(15):
Art. No. 154101 (April 2005).
Lin, H. H., D. E. Faunce, M. Stacey, A.
Terajewicz, T. Nakamura, J. Zhang-Hoover, M. Kerley, M. L. Mucenski, S. Gordon,
and J. Stein-Streilein, “ The macrophage F4/80 receptor is required for the
induction of antigen-specific efferent regulatory T cells in peripheral
tolerance,” Journal of Experimental
Medicine 201(10): 1615-1625 (May
2005).
Opresko, D. M., “A new species of
antipatharian coral (Cnidaria : Anthozoa:
Antipatharia) from the southern California Bight,” Zootaxa (852): 1-10 (February 2005).
Oren, A., F. Larimer, P. Richardson, A.
Lapidus, and L. N. Csonka, “How to be moderately halophilic with broad salt
tolerance: clues from the genome of Chromohalobacter salexigens,” Extremophiles
9(4): 275-279 (August 2005).
Pan, C. and R. L. Hettich,
“Multipole-storage-assisted dissociation for the characterization of large
proteins and simple protein mixtures by ESI-FTICR-MS,” Analytical Chemistry 77(10):
3072-3082 (May 2005).
Passian, A., R. H. Ritchie, A.L. Lereu,
T. Thundat, and T. L. Ferrell, “Curvature effects in surface plasmon dispersion
and coupling,” Physical Review 71(11): Art. No. 115425 (March 2005).
Passian, A., A. L. Lereu, A. Wig, F.
Meriaudeau, T. Thundat, and T. L. Ferrell, “Imaging standing surface plasmons
by photon tunneling,” Physical Review
71(16): Art. No. 165418 (April
2005).
Pinnaduwage, L. A., H. F. Ji, and T.
Thundat, “Moore’s
law in homeland defense: An integrated sensor platform based on silicon
microcantilevers,” IEEE Sensors Journal
5(4): 774-785 (August 2005).
Ram, R. J., N. C. VerBerkmoes, M. P.
Thelen, G. W. Tyson, B. J. Baker, R. C. Blake, M. Shah, R. L. Hettich, and J.
F. Banfield, “Community proteomics of a natural microbial biofilm,” Science
308(5730): 1915-1920 (June 2005).
Russell, L. B., P. R. Hunsicker, M.
Kerley, A. Pyle, and A. M. Saxton, “Etoposide exposure during male mouse
pachytene has complex effects on crossing-over and causes nondisjunction,” Mutation Research-Genetic Toxicology and
Environ. Mutagenesis 565(1):
61-77 (December 2004).
Sharp, J. S., J. T. Guo, T. Uchiki, Y.
Xu, C. Dealwis, and R. L. Hettich, “Photochemical surface mapping of C14S-Sml1p
for constrained computational modeling of protein structure,” Analytical Biochemistry
340(2): 201-212 (May 2005).
Song, J. M., M. Culha, P. A. Kasili, G.
D. Griffin, and T. Vo-Dinh, “A compact CMOS biochip immunosensor towards the
detection of a single bacteria,” Biosensors
& Bioelectronics 20(11):
2203-2209 (May 2005).
Squibb, K. S., R. W. Leggett, and M. A.
McDiarmid, “Prediction of renal concentrations of depleted uranium and
radiation dose in Gulf War veterans with embedded shrapnel,” Health Physics
89(3): 367-273 (September 2005).
Tabb, D. L., C. Narasimhan, M. B.
Strader, and R. L. Hettich, “DBDigger: Reorganized proteomic database
identification that improves flexibility and speed,” Analytical Chemistry 77(8):
2464-2474 (April 2005).
Tabb, D. L., M. R. Thompson, G. Khalsa-Moyers,
N. C. VerBerkmoes, and W. H. McDonald, “MS2Grouper: Group assessment and
synthetic replacement of duplicate proteomic tandem mass spectra,” Journal of the American Society for Mass
Spectrometry 16(8): 1250-1261
(August 2005).
Thyrell, L., O. Sangfelt, B.
Zhivotovsky, K. Pokrovskaja, Y. S. Wang, S. Einhorn, and D. Grander, “The
HPV-16 E7 oncogene sensitizes malignant cells to IFN-alpha-induced apoptosis,” Journal of Interferon and
Cytokine Research 25(2): 63-72 (February 2005).
Tian, F., K. M. Hansen, T. L. Ferrell,
and T. Thundat, “Dynamic microcantilever sensors for discerning biomolecular
interactions,” Analytical Chemistry 77(6): 1601-1606 (March 2005).
Tian, F., V.I. Boiadjiev, L. A. Pinnaduwage, G. M. Brown, and T. Thundat, “Selective detection
of Cr(VI) using a microcantilever electrode coated with a self-assembled
monolayer,” Journal of Vacuum Science
& Technology A 23(4):
1022-1028(July-August 2005).
Vo-Dinh, T. and P. Kasili, “Fiber-optic
nanosensors for single-cell monitoring,” Analytical
and Bioanalytical Chemistry 382(4):
918-925 (June 2005).
Vo-Dinh, T., F. Yan, and M. B.
Wabuyele, “Surface-enhanced Raman scattering for medical diagnostics and
biological imaging,” Journal of Raman Spectroscopy 36 (6-7):
640-647 (June – July 2005).
Volkan, M., D. L. Stokes, and T.
Vo-Dinh, “A sol-gel derived AgCl photochromic coating on glass for SERS
chemical sensor application,” Sensors and
Actuators B-Chemical 106(2):
660-667 (May 2005).
Wabuyele, M. B., F. Yan, G. D. Griffin,
and T. Vo-Dinh, “Hyperspectral surface-enhanced Raman imaging of labeled silver
nanoparticles in single cells,” Review of
Scientific Instruments 76(6):
Art. No. 063710 (June 2005).
Wan, X. F., N. C. VerBerkmoes, L. A.
McCue, D. Stanek, H. Connelly, L. J. Hauser, L. Y. Wu, X. D. Liu, T. F.
Yan, A. Leaphart, R. L. Hettich, J. Z. Zhou, and D. K. Thompson,
“Transcriptomic and proteomic characterization of the fur modulon in the
metal-reducing bacterium Shewanella oneidensis,” Journal of Bacteriology 186(24):
8385-8400 (December 2004).
Wang, Y. S., N. Erdmann, R. J.
Giannone, J. Wu, M. Gomez, and Y. Liu, “An increase in telomere sister
chromatid exchange in murine embryonic stem cells possessing critically
shortened telomeres,“ Proceedings of the
National Academy of Sciences 102(29):
10256-10260 (July 2005).
Yan, F., M. B. Wabuyele, G. D. Griffin,
A. A. Vass, and T. Vo-Dinh, “Surface-enhanced Ramam scattering, detection of
chemical and biological agent stimulants,” IEEE
Sensors Journal 5(4): 665-670
(August 2005).
Yan, F., S. Williams, G. D. Griffin, R.
Jagannathan, S. E Plunkett, K. H. Shafer, and T. Vo-Dinh, “Near-real-time
determination of hydrogen peroxide generated from cigarette smoke,” Journal of Environmental Monitoring
7(7): 681-687 (July 2005).
Zhang, B.,S. Kirov, and J. Snoddy, “WebGestalt: an integrated system for
exploring gene sets in various biological contexts,” Nucleic Acids Research 33:
W741-W748 Suppl. 2 (July 2005).
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